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tecangenomics / nudup

NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.
http://www.tecangenomics.com
GNU Lesser General Public License v3.0
14 stars 9 forks source link

nudup invalid syntax error #2

Closed amitgsir closed 7 years ago

amitgsir commented 7 years ago

Hi, I am trying to run the nudup program and it looks like the broken one.

Can you tell me how to start ot fix it.

Amit

[agoyal@edico nudup]$ python nudup.py -h File "./nudup.py", line 805 with tempfile.NamedTemporaryFile(prefix=DEFAULT_TMP, suffix='_sorted.fq') as fq_path, tempfile.NamedTemporaryFile(prefix=DEFAULT_TMP, suffix='_sorted.sam') as sam_path, tempfile.NamedTemporaryFile(prefix=DEFAULT_TMP, suffix='_umi_sorted.bam') as sorted_umi_sam: ^ SyntaxError: invalid syntax

Amit Goyal, EDGC, Korea

amitgsir commented 7 years ago

Solved..