Open frankyan opened 5 years ago
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Is there a reason why the suggested bug-fix (which b.t.w. works also for paired-end data) hasn't yet been implemented and the issue is still open?
Hi, I found that when in "--rmdup-only" mode, the qname (read name) of each line in output bam file was shorten by the number of (len_dupindex + 1). For example:
I checked the source code and found the bug. It's in line 307 and 308, which apply
UMIStripFunc
by_get_sam_str
two times tosam_row
.I have pulled a request to fix this problem #23 . I used single end sequencing data. I did't test paired-end data.