How to get index.fq file from bcl files?

tecangenomics / nudup

NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.

http://www.tecangenomics.com

GNU Lesser General Public License v3.0

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How to get index.fq file from bcl files? #24

Closed YuanTian1991 closed 4 years ago

YuanTian1991 commented 4 years ago

Hi dear NuGEN tech team, I am new to analysing RRBS data, and currently stuck on the Nudup step. Since I can not find how to generate the index.fq file. Could you help me with that?

mlovci commented 4 years ago

Instructions for bcl2fastq are in Appendix F of the RRBS user guide