Closed ashkan-leo closed 2 years ago
I tried to upgrade to 1.7 from 1.6. I get the following build errors in Ubuntu:
• Updating torchsort (0.1.6 -> 0.1.7): Failed EnvCommandError Command ['/home/jkk/w/N9MER/.venv/bin/pip', 'install', '--no-deps', '-U', 'file:///home/jkk/.cache/pypoetry/artifacts/dd/3b/ee/bd011dc524042d73babfc5cb3551973002870652949f15af2cd67740a4/torchsort-0.1.7.tar.gz'] errored with the following return code 1, and output: Processing /home/jkk/.cache/pypoetry/artifacts/dd/3b/ee/bd011dc524042d73babfc5cb3551973002870652949f15af2cd67740a4/torchsort-0.1.7.tar.gz Building wheels for collected packages: torchsort Building wheel for torchsort (setup.py): started Building wheel for torchsort (setup.py): finished with status 'error' ERROR: Command errored out with exit status 1: command: /home/jkk/w/N9MER/.venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-n22hcjuz/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-n22hcjuz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-k64ka9oe cwd: /tmp/pip-req-build-n22hcjuz/ Complete output (37 lines): running bdist_wheel /home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/utils/cpp_extension.py:370: UserWarning: Attempted to use ninja as the BuildExtension backend but we could not find ninja.. Falling back to using the slow distutils backend. warnings.warn(msg.format('we could not find ninja.')) running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/torchsort copying torchsort/__init__.py -> build/lib.linux-x86_64-3.9/torchsort copying torchsort/ops.py -> build/lib.linux-x86_64-3.9/torchsort running egg_info writing torchsort.egg-info/PKG-INFO writing dependency_links to torchsort.egg-info/dependency_links.txt writing requirements to torchsort.egg-info/requires.txt writing top-level names to torchsort.egg-info/top_level.txt reading manifest file 'torchsort.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'torchsort.egg-info/SOURCES.txt' copying torchsort/isotonic_cpu.cpp -> build/lib.linux-x86_64-3.9/torchsort copying torchsort/isotonic_cuda.cu -> build/lib.linux-x86_64-3.9/torchsort running build_ext building 'torchsort.isotonic_cpu' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/torchsort gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/TH -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/THC -I/home/jkk/w/N9MER/.venv/include -I/home/jkk/.pyenv/versions/3.9.4/include/python3.9 -c torchsort/isotonic_cpu.cpp -o build/temp.linux-x86_64-3.9/torchsort/isotonic_cpu.o -fopenmp -ffast-math -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=isotonic_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14 g++ -pthread -shared -L/home/jkk/.pyenv/versions/3.9.4/lib -L/home/jkk/.pyenv/versions/3.9.4/lib build/temp.linux-x86_64-3.9/torchsort/isotonic_cpu.o -L/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/lib -lc10 -ltorch -ltorch_cpu -ltorch_python -o build/lib.linux-x86_64-3.9/torchsort/isotonic_cpu.cpython-39-x86_64-linux-gnu.so building 'torchsort.isotonic_cuda' extension /usr/bin/nvcc -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/TH -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/THC -I/home/jkk/w/N9MER/.venv/include -I/home/jkk/.pyenv/versions/3.9.4/include/python3.9 -c torchsort/isotonic_cuda.cu -o build/temp.linux-x86_64-3.9/torchsort/isotonic_cuda.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_BFLOAT16_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options '-fPIC' -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=isotonic_cuda -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_61,code=compute_61 -gencode=arch=compute_61,code=sm_61 -std=c++14 /usr/include/c++/10/chrono: In substitution of ‘template<class _Rep, class _Period> template<class _Period2> using __is_harmonic = std::__bool_constant<(std::ratio<((_Period2::num / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::num, _Period::num)) * (_Period::den / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::den, _Period::den))), ((_Period2::den / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::den, _Period::den)) * (_Period::num / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::num, _Period::num)))>::den == 1)> [with _Period2 = _Period2; _Rep = _Rep; _Period = _Period]’: /usr/include/c++/10/chrono:473:154: required from here /usr/include/c++/10/chrono:428:27: internal compiler error: Segmentation fault 428 | _S_gcd(intmax_t __m, intmax_t __n) noexcept | ^~~~~~ Please submit a full bug report, with preprocessed source if appropriate. See <file:///usr/share/doc/gcc-10/README.Bugs> for instructions. error: command '/usr/bin/nvcc' failed with exit code 1 ---------------------------------------- ERROR: Failed building wheel for torchsort Running setup.py clean for torchsort Failed to build torchsort Installing collected packages: torchsort Attempting uninstall: torchsort Found existing installation: torchsort 0.1.6 Uninstalling torchsort-0.1.6: Successfully uninstalled torchsort-0.1.6 Running setup.py install for torchsort: started Running setup.py install for torchsort: finished with status 'error' ERROR: Command errored out with exit status 1: command: /home/jkk/w/N9MER/.venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-n22hcjuz/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-n22hcjuz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-87f187fd/install-record.txt --single-version-externally-managed --compile --install-headers /home/jkk/w/N9MER/.venv/include/site/python3.9/torchsort cwd: /tmp/pip-req-build-n22hcjuz/ Complete output (37 lines): running install running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/torchsort copying torchsort/__init__.py -> build/lib.linux-x86_64-3.9/torchsort copying torchsort/ops.py -> build/lib.linux-x86_64-3.9/torchsort running egg_info writing torchsort.egg-info/PKG-INFO writing dependency_links to torchsort.egg-info/dependency_links.txt writing requirements to torchsort.egg-info/requires.txt writing top-level names to torchsort.egg-info/top_level.txt /home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/utils/cpp_extension.py:370: UserWarning: Attempted to use ninja as the BuildExtension backend but we could not find ninja.. Falling back to using the slow distutils backend. warnings.warn(msg.format('we could not find ninja.')) reading manifest file 'torchsort.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'torchsort.egg-info/SOURCES.txt' copying torchsort/isotonic_cpu.cpp -> build/lib.linux-x86_64-3.9/torchsort copying torchsort/isotonic_cuda.cu -> build/lib.linux-x86_64-3.9/torchsort running build_ext building 'torchsort.isotonic_cpu' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/torchsort gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/TH -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/THC -I/home/jkk/w/N9MER/.venv/include -I/home/jkk/.pyenv/versions/3.9.4/include/python3.9 -c torchsort/isotonic_cpu.cpp -o build/temp.linux-x86_64-3.9/torchsort/isotonic_cpu.o -fopenmp -ffast-math -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=isotonic_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14 g++ -pthread -shared -L/home/jkk/.pyenv/versions/3.9.4/lib -L/home/jkk/.pyenv/versions/3.9.4/lib build/temp.linux-x86_64-3.9/torchsort/isotonic_cpu.o -L/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/lib -lc10 -ltorch -ltorch_cpu -ltorch_python -o build/lib.linux-x86_64-3.9/torchsort/isotonic_cpu.cpython-39-x86_64-linux-gnu.so building 'torchsort.isotonic_cuda' extension /usr/bin/nvcc -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/TH -I/home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torch/include/THC -I/home/jkk/w/N9MER/.venv/include -I/home/jkk/.pyenv/versions/3.9.4/include/python3.9 -c torchsort/isotonic_cuda.cu -o build/temp.linux-x86_64-3.9/torchsort/isotonic_cuda.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_BFLOAT16_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options '-fPIC' -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=isotonic_cuda -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_61,code=compute_61 -gencode=arch=compute_61,code=sm_61 -std=c++14 /usr/include/c++/10/chrono: In substitution of ‘template<class _Rep, class _Period> template<class _Period2> using __is_harmonic = std::__bool_constant<(std::ratio<((_Period2::num / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::num, _Period::num)) * (_Period::den / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::den, _Period::den))), ((_Period2::den / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::den, _Period::den)) * (_Period::num / std::chrono::duration<_Rep, _Period>::_S_gcd(_Period2::num, _Period::num)))>::den == 1)> [with _Period2 = _Period2; _Rep = _Rep; _Period = _Period]’: /usr/include/c++/10/chrono:473:154: required from here /usr/include/c++/10/chrono:428:27: internal compiler error: Segmentation fault 428 | _S_gcd(intmax_t __m, intmax_t __n) noexcept | ^~~~~~ Please submit a full bug report, with preprocessed source if appropriate. See <file:///usr/share/doc/gcc-10/README.Bugs> for instructions. error: command '/usr/bin/nvcc' failed with exit code 1 ---------------------------------------- Rolling back uninstall of torchsort Moving to /home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torchsort-0.1.6.dist-info/ from /home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/~orchsort-0.1.6.dist-info Moving to /home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/torchsort/ from /home/jkk/w/N9MER/.venv/lib/python3.9/site-packages/~-rchsort ERROR: Command errored out with exit status 1: /home/jkk/w/N9MER/.venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-n22hcjuz/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-n22hcjuz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-87f187fd/install-record.txt --single-version-externally-managed --compile --install-headers /home/jkk/w/N9MER/.venv/include/site/python3.9/torchsort Check the logs for full command output.
I have the following nvcc --version:
nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2021 NVIDIA Corporation Built on Sun_Feb_14_21:12:58_PST_2021 Cuda compilation tools, release 11.2, V11.2.152 Build cuda_11.2.r11.2/compiler.29618528_0
Any help is appreciated!
Are you able to install 1.6 alright? What happens if you remove both and try to install 1.7?
Closing due to lack of activity and I am unable to reproduce
I tried to upgrade to 1.7 from 1.6. I get the following build errors in Ubuntu:
I have the following nvcc --version:
Any help is appreciated!