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Integration of TensorFlow with other open-source frameworks
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Get error when I run spark-tensorflow-connector example... #185

Closed Xiaoxiong-Liu closed 3 years ago

Xiaoxiong-Liu commented 3 years ago

when I run the spark-tensorflow-connector example code:

from pyspark.sql.types import *

path = "test-output.tfrecord"

fields = [StructField("id", IntegerType()), StructField("IntegerCol", IntegerType()),
          StructField("LongCol", LongType()), StructField("FloatCol", FloatType()),
          StructField("DoubleCol", DoubleType()), StructField("VectorCol", ArrayType(DoubleType(), True)),
          StructField("StringCol", StringType())]
schema = StructType(fields)
test_rows = [[11, 1, 23, 10.0, 14.0, [1.0, 2.0], "r1"], [21, 2, 24, 12.0, 15.0, [2.0, 2.0], "r2"]]
rdd = spark.sparkContext.parallelize(test_rows)
df = spark.createDataFrame(rdd, schema)
df.write.format("tfrecords").option("recordType", "Example").save(path)

df = spark.read.format("tfrecords").option("recordType", "Example").load(path)
df.show()

I got this error:

---------------------------------------------------------------------------
Py4JJavaError                             Traceback (most recent call last)
<ipython-input-6-022e71162f7a> in <module>
----> 1 df.write.format("tfrecords").mode('overwrite').option("recordType", "Example").save(path)
      2 

/software/servers/10k/mart_scr/spark/python/pyspark/sql/readwriter.py in save(self, path, format, mode, partitionBy, **options)
    737             self._jwrite.save()
    738         else:
--> 739             self._jwrite.save(path)
    740 
    741     @since(1.4)

/software/servers/10k/mart_scr/spark/python/lib/py4j-0.10.7-src.zip/py4j/java_gateway.py in __call__(self, *args)
   1255         answer = self.gateway_client.send_command(command)
   1256         return_value = get_return_value(
-> 1257             answer, self.gateway_client, self.target_id, self.name)
   1258 
   1259         for temp_arg in temp_args:

/software/servers/10k/mart_scr/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
     61     def deco(*a, **kw):
     62         try:
---> 63             return f(*a, **kw)
     64         except py4j.protocol.Py4JJavaError as e:
     65             s = e.java_exception.toString()

/software/servers/10k/mart_scr/spark/python/lib/py4j-0.10.7-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    326                 raise Py4JJavaError(
    327                     "An error occurred while calling {0}{1}{2}.\n".
--> 328                     format(target_id, ".", name), value)
    329             else:
    330                 raise Py4JError(

Py4JJavaError: An error occurred while calling o312.save.
: org.apache.spark.SparkException: Job aborted.
    at org.apache.spark.internal.io.SparkHadoopWriter$.write(SparkHadoopWriter.scala:100)
    at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply$mcV$sp(PairRDDFunctions.scala:1083)
    at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply(PairRDDFunctions.scala:1081)
    at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply(PairRDDFunctions.scala:1081)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:391)
    at org.apache.spark.rdd.PairRDDFunctions.saveAsNewAPIHadoopDataset(PairRDDFunctions.scala:1081)
    at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopFile$2.apply$mcV$sp(PairRDDFunctions.scala:1000)
    at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopFile$2.apply(PairRDDFunctions.scala:991)
    at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopFile$2.apply(PairRDDFunctions.scala:991)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:391)
    at org.apache.spark.rdd.PairRDDFunctions.saveAsNewAPIHadoopFile(PairRDDFunctions.scala:991)
    at org.tensorflow.spark.datasources.tfrecords.DefaultSource.save(DefaultSource.scala:94)
    at org.tensorflow.spark.datasources.tfrecords.DefaultSource.saveDistributed(DefaultSource.scala:114)
    at org.tensorflow.spark.datasources.tfrecords.DefaultSource.createRelation(DefaultSource.scala:73)
    at org.apache.spark.sql.execution.datasources.SaveIntoDataSourceCommand.run(SaveIntoDataSourceCommand.scala:45)
    at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:70)
    at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:68)
    at org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(commands.scala:86)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:137)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:133)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:169)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
    at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:166)
    at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:133)
    at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:109)
    at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:107)
    at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:676)
    at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:676)
    at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:79)
    at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:126)
    at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:74)
    at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:676)
    at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:285)
    at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:271)
    at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:229)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 2.0 failed 6 times, most recent failure: Lost task 1.5 in stage 2.0 (TID 12, BJLFRZ-Evil-113-165.hadoop.jd.local, executor 6): java.io.IOException: unexpected exception type
    at java.io.ObjectStreamClass.throwMiscException(ObjectStreamClass.java:1582)
    at java.io.ObjectStreamClass.invokeReadResolve(ObjectStreamClass.java:1154)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2022)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2231)
    at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2155)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2013)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2231)
    at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2155)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2013)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2231)
    at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2155)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2013)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.readObject(ObjectInputStream.java:422)
    at org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
    at org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:83)
    at org.apache.spark.scheduler.Task.run(Task.scala:125)
    at org.apache.spark.executor.Executor$TaskRunner$$anonfun$11.apply(Executor.scala:415)
    at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1495)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:421)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at java.lang.invoke.SerializedLambda.readResolve(SerializedLambda.java:230)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at java.io.ObjectStreamClass.invokeReadResolve(ObjectStreamClass.java:1148)
    ... 25 more
Caused by: java.lang.BootstrapMethodError: java.lang.NoClassDefFoundError: scala/runtime/LambdaDeserialize
    at org.tensorflow.spark.datasources.tfrecords.DefaultSource.$deserializeLambda$(DefaultSource.scala)
    ... 35 more
Caused by: java.lang.NoClassDefFoundError: scala/runtime/LambdaDeserialize
    ... 36 more
Caused by: java.lang.ClassNotFoundException: scala.runtime.LambdaDeserialize
    at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 36 more

Driver stacktrace:
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:2187)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:2136)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:2135)
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2135)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:1069)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:1069)
    at scala.Option.foreach(Option.scala:257)
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:1069)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2367)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2316)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2305)
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:880)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2158)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2179)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2211)
    at org.apache.spark.internal.io.SparkHadoopWriter$.write(SparkHadoopWriter.scala:78)
    ... 49 more
Caused by: java.io.IOException: unexpected exception type
    at java.io.ObjectStreamClass.throwMiscException(ObjectStreamClass.java:1582)
    at java.io.ObjectStreamClass.invokeReadResolve(ObjectStreamClass.java:1154)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2022)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2231)
    at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2155)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2013)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2231)
    at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2155)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2013)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2231)
    at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2155)
    at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2013)
    at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
    at java.io.ObjectInputStream.readObject(ObjectInputStream.java:422)
    at org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
    at org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:83)
    at org.apache.spark.scheduler.Task.run(Task.scala:125)
    at org.apache.spark.executor.Executor$TaskRunner$$anonfun$11.apply(Executor.scala:415)
    at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1495)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:421)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    ... 1 more
Caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at java.lang.invoke.SerializedLambda.readResolve(SerializedLambda.java:230)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at java.io.ObjectStreamClass.invokeReadResolve(ObjectStreamClass.java:1148)
    ... 25 more
Caused by: java.lang.BootstrapMethodError: java.lang.NoClassDefFoundError: scala/runtime/LambdaDeserialize
    at org.tensorflow.spark.datasources.tfrecords.DefaultSource.$deserializeLambda$(DefaultSource.scala)
    ... 35 more
Caused by: java.lang.NoClassDefFoundError: scala/runtime/LambdaDeserialize
    ... 36 more
Caused by: java.lang.ClassNotFoundException: scala.runtime.LambdaDeserialize
    at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 36 more

Any suggestion？ is it version mismatch?

Xiaoxiong-Liu commented 3 years ago

It may be the version problem. Everything gose well when I rebuild the connector. So I will close this issue.