Colab %tensorboard drops support for embedding projector

[korakot]

Consider Stack Overflow for getting support using TensorBoard—they have a larger community with better searchability:

https://stackoverflow.com/questions/tagged/tensorboard

Do not use this template for for setup, installation, or configuration issues. Instead, use the “installation problem” issue template:

https://github.com/tensorflow/tensorboard/issues/new?template=installation_problem.md

To report a problem with TensorBoard itself, please fill out the remainder of this template.

Environment information (required)

Please run diagnose_tensorboard.py (link below) in the same environment from which you normally run TensorFlow/TensorBoard, and paste the output here:

Diagnostics output

`````` --- check: autoidentify INFO: diagnose_tensorboard.py source unavailable --- check: general INFO: sys.version_info: sys.version_info(major=3, minor=6, micro=9, releaselevel='final', serial=0) INFO: os.name: posix INFO: os.uname(): posix.uname_result(sysname='Linux', nodename='4cc894f07e89', release='4.14.137+', version='#1 SMP Thu Aug 8 02:47:02 PDT 2019', machine='x86_64') INFO: sys.getwindowsversion(): N/A --- check: package_management INFO: has conda-meta: False INFO: $VIRTUAL_ENV: None --- check: installed_packages INFO: installed: tensorboard==1.15.0 INFO: installed: tensorflow==1.15.0 INFO: installed: tensorflow-estimator==1.15.1 --- check: tensorboard_python_version INFO: tensorboard.version.VERSION: '1.15.0' --- check: tensorflow_python_version The default version of TensorFlow in Colab will soon switch to TensorFlow 2.x. We recommend you upgrade now or ensure your notebook will continue to use TensorFlow 1.x via the %tensorflow_version 1.x magic: more info. INFO: tensorflow.__version__: '1.15.0' INFO: tensorflow.__git_version__: 'v1.15.0-0-g590d6eef7e' --- check: tensorboard_binary_path INFO: which tensorboard: b'/usr/local/bin/tensorboard\n' --- check: addrinfos socket.has_ipv6 = True socket.AF_UNSPEC = socket.SOCK_STREAM = socket.AI_ADDRCONFIG = socket.AI_PASSIVE = Loopback flags: Loopback infos: [(, , 6, '', ('127.0.0.1', 0))] Wildcard flags: Wildcard infos: [(, , 6, '', ('0.0.0.0', 0)), (, , 6, '', ('::', 0, 0, 0))] --- check: readable_fqdn INFO: socket.getfqdn(): '4cc894f07e89' --- check: stat_tensorboardinfo INFO: directory: /tmp/.tensorboard-info INFO: .tensorboard-info directory does not exist --- check: source_trees_without_genfiles INFO: tensorboard_roots (1): ['/usr/local/lib/python3.6/dist-packages']; bad_roots (0): [] --- check: full_pip_freeze INFO: pip freeze --all: absl-py==0.9.0 alabaster==0.7.12 albumentations==0.1.12 altair==4.0.0 asgiref==3.2.3 astor==0.8.1 astropy==4.0 atari-py==0.2.6 atomicwrites==1.3.0 attrs==19.3.0 audioread==2.1.8 autograd==1.3 Babel==2.8.0 backcall==0.1.0 backports.tempfile==1.0 backports.weakref==1.0.post1 beautifulsoup4==4.6.3 bleach==3.1.0 blis==0.2.4 bokeh==1.4.0 boto==2.49.0 boto3==1.10.47 botocore==1.13.47 Bottleneck==1.3.1 branca==0.3.1 bs4==0.0.1 bz2file==0.98 cachetools==4.0.0 certifi==2019.11.28 cffi==1.13.2 chainer==6.5.0 chardet==3.0.4 chart-studio==1.0.0 Click==7.0 cloudpickle==1.2.2 cmake==3.12.0 colorlover==0.3.0 community==1.0.0b1 contextlib2==0.5.5 convertdate==2.2.0 coverage==3.7.1 coveralls==0.5 crcmod==1.7 cufflinks==0.17.0 cvxopt==1.2.3 cvxpy==1.0.25 cycler==0.10.0 cymem==2.0.3 Cython==0.29.14 daft==0.0.4 dask==2.9.1 dataclasses==0.7 datascience==0.10.6 decorator==4.4.1 defusedxml==0.6.0 descartes==1.1.0 dill==0.3.1.1 distributed==1.25.3 Django==3.0.2 dlib==19.18.0 dm-sonnet==1.35 docopt==0.6.2 docutils==0.15.2 dopamine-rl==1.0.5 earthengine-api==0.1.209 easydict==1.9 ecos==2.0.7.post1 editdistance==0.5.3 en-core-web-sm==2.1.0 entrypoints==0.3 et-xmlfile==1.0.1 fa2==0.3.5 fancyimpute==0.4.3 fastai==1.0.60 fastcache==1.1.0 fastdtw==0.3.4 fastprogress==0.2.2 fastrlock==0.4 fbprophet==0.5 feather-format==0.4.0 featuretools==0.4.1 filelock==3.0.12 fix-yahoo-finance==0.0.22 Flask==1.1.1 folium==0.8.3 fsspec==0.6.2 future==0.16.0 gast==0.2.2 GDAL==2.2.2 gdown==3.6.4 gensim==3.6.0 geographiclib==1.50 geopy==1.17.0 gevent==1.4.0 gin-config==0.3.0 glob2==0.7 google==2.0.3 google-api-core==1.15.0 google-api-python-client==1.7.11 google-auth==1.4.2 google-auth-httplib2==0.0.3 google-auth-oauthlib==0.4.1 google-cloud-bigquery==1.21.0 google-cloud-core==1.0.3 google-cloud-datastore==1.8.0 google-cloud-language==1.2.0 google-cloud-storage==1.16.2 google-cloud-translate==1.5.0 google-colab==1.0.0 google-pasta==0.1.8 google-resumable-media==0.4.1 googleapis-common-protos==1.6.0 googledrivedownloader==0.4 graph-nets==1.0.5 graphviz==0.10.1 greenlet==0.4.15 grpcio==1.15.0 gspread==3.0.1 gspread-dataframe==3.0.3 gunicorn==20.0.4 gym==0.15.4 h5py==2.8.0 HeapDict==1.0.1 holidays==0.9.12 html5lib==1.0.1 httpimport==0.5.18 httplib2==0.11.3 humanize==0.5.1 hyperopt==0.1.2 ideep4py==2.0.0.post3 idna==2.8 image==1.5.27 imageio==2.4.1 imagesize==1.2.0 imbalanced-learn==0.4.3 imblearn==0.0 imgaug==0.2.9 importlib-metadata==1.4.0 imutils==0.5.3 inflect==2.1.0 intel-openmp==2020.0.133 intervaltree==2.1.0 ipykernel==4.6.1 ipython==5.5.0 ipython-genutils==0.2.0 ipython-sql==0.3.9 ipywidgets==7.5.1 itsdangerous==1.1.0 jax==0.1.52 jaxlib==0.1.36 jdcal==1.4.1 jedi==0.15.2 jieba==0.40 Jinja2==2.10.3 jmespath==0.9.4 joblib==0.14.1 jpeg4py==0.1.4 jsonschema==2.6.0 jupyter==1.0.0 jupyter-client==5.3.4 jupyter-console==5.2.0 jupyter-core==4.6.1 kaggle==1.5.6 kapre==0.1.3.1 Keras==2.2.5 Keras-Applications==1.0.8 Keras-Preprocessing==1.1.0 keras-vis==0.4.1 kfac==0.2.0 kiwisolver==1.1.0 knnimpute==0.1.0 librosa==0.6.3 lightgbm==2.2.3 llvmlite==0.31.0 lmdb==0.98 lucid==0.3.8 lunardate==0.2.0 lxml==4.2.6 magenta==0.3.19 Markdown==3.1.1 MarkupSafe==1.1.1 matplotlib==3.1.2 matplotlib-venn==0.11.5 mesh-tensorflow==0.1.8 mido==1.2.6 mir-eval==0.5 missingno==0.4.2 mistune==0.8.4 mizani==0.6.0 mkl==2019.0 mlxtend==0.14.0 more-itertools==8.0.2 moviepy==0.2.3.5 mpi4py==3.0.3 mpmath==1.1.0 msgpack==0.5.6 multiprocess==0.70.9 multitasking==0.0.9 murmurhash==1.0.2 music21==5.5.0 natsort==5.5.0 nbconvert==5.6.1 nbformat==5.0.3 networkx==2.4 nibabel==2.3.3 nltk==3.2.5 notebook==5.2.2 np-utils==0.5.12.1 numba==0.47.0 numexpr==2.7.1 numpy==1.17.5 nvidia-ml-py3==7.352.0 oauth2client==4.1.3 oauthlib==3.1.0 okgrade==0.4.3 opencv-contrib-python==4.1.2.30 opencv-python==4.1.2.30 openpyxl==2.5.9 opt-einsum==3.1.0 osqp==0.6.1 packaging==20.0 palettable==3.3.0 pandas==0.25.3 pandas-datareader==0.7.4 pandas-gbq==0.11.0 pandas-profiling==1.4.1 pandocfilters==1.4.2 parso==0.5.2 pathlib==1.0.1 patsy==0.5.1 pexpect==4.7.0 pickleshare==0.7.5 Pillow==6.2.2 pip==19.3.1 pip-tools==4.2.0 plac==0.9.6 plotly==4.4.1 plotnine==0.6.0 pluggy==0.7.1 portpicker==1.2.0 prefetch-generator==1.0.1 preshed==2.0.1 pretty-midi==0.2.8 prettytable==0.7.2 progressbar2==3.38.0 prometheus-client==0.7.1 promise==2.3 prompt-toolkit==1.0.18 protobuf==3.10.0 psutil==5.4.8 psycopg2==2.7.6.1 ptyprocess==0.6.0 py==1.8.1 pyarrow==0.14.1 pyasn1==0.4.8 pyasn1-modules==0.2.7 pycocotools==2.0.0 pycparser==2.19 pydata-google-auth==0.2.1 pydot==1.3.0 pydot-ng==2.0.0 pydotplus==2.0.2 PyDrive==1.3.1 pyemd==0.5.1 pyglet==1.3.2 Pygments==2.1.3 pygobject==3.26.1 pymc3==3.7 PyMeeus==0.3.6 pymongo==3.10.0 pymystem3==0.2.0 PyOpenGL==3.1.5 pyparsing==2.4.6 pypng==0.0.20 pyrsistent==0.15.7 pysndfile==1.3.8 PySocks==1.7.1 pystan==2.19.1.1 pytest==3.6.4 python-apt==1.6.4 python-chess==0.23.11 python-dateutil==2.6.1 python-louvain==0.13 python-rtmidi==1.3.1 python-slugify==4.0.0 python-utils==2.3.0 pytz==2018.9 PyWavelets==1.1.1 PyYAML==3.13 pyzmq==17.0.0 qtconsole==4.6.0 regex==2019.12.20 requests==2.21.0 requests-oauthlib==1.3.0 resampy==0.2.2 retrying==1.3.3 rpy2==2.9.5 rsa==4.0 s3fs==0.4.0 s3transfer==0.2.1 scikit-image==0.16.2 scikit-learn==0.22.1 scipy==1.4.1 screen-resolution-extra==0.0.0 scs==2.1.1.post2 seaborn==0.9.0 semantic-version==2.8.4 Send2Trash==1.5.0 setuptools==42.0.2 setuptools-git==1.2 Shapely==1.6.4.post2 simplegeneric==0.8.1 six==1.12.0 sklearn==0.0 sklearn-pandas==1.8.0 smart-open==1.9.0 snowballstemmer==2.0.0 sortedcontainers==2.1.0 spacy==2.1.9 Sphinx==1.8.5 sphinxcontrib-websupport==1.1.2 SQLAlchemy==1.3.12 sqlparse==0.3.0 srsly==1.0.1 stable-baselines==2.2.1 statsmodels==0.10.2 sympy==1.1.1 tables==3.4.4 tabulate==0.8.6 tblib==1.6.0 tensor2tensor==1.14.1 tensorboard==1.15.0 tensorboardcolab==0.0.22 tensorflow==1.15.0 tensorflow-datasets==1.3.2 tensorflow-estimator==1.15.1 tensorflow-gan==2.0.0 tensorflow-hub==0.7.0 tensorflow-metadata==0.15.2 tensorflow-privacy==0.2.2 tensorflow-probability==0.7.0 termcolor==1.1.0 terminado==0.8.3 testpath==0.4.4 text-unidecode==1.3 textblob==0.15.3 textgenrnn==1.4.1 tflearn==0.3.2 Theano==1.0.4 thinc==7.0.8 toolz==0.10.0 torch==1.3.1 torchsummary==1.5.1 torchtext==0.3.1 torchvision==0.4.2 tornado==4.5.3 tqdm==4.28.1 traitlets==4.3.3 tweepy==3.6.0 typing==3.6.6 typing-extensions==3.6.6 tzlocal==1.5.1 umap-learn==0.3.10 uritemplate==3.0.1 urllib3==1.24.3 vega-datasets==0.8.0 wasabi==0.6.0 wcwidth==0.1.8 webencodings==0.5.1 Werkzeug==0.16.0 wheel==0.33.6 widgetsnbextension==3.5.1 wordcloud==1.5.0 wrapt==1.11.2 xarray==0.14.1 xgboost==0.90 xkit==0.0.0 xlrd==1.1.0 xlwt==1.3.0 yellowbrick==0.9.1 zict==1.0.0 zipp==0.6.0 zmq==0.0.0 ``````

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Issue description

Please describe the bug as clearly as possible. How can we reproduce the problem without additional resources (including external data files and proprietary Python modules)?

The following code used to work when Colab first had %tensorboard.

It's a minimal example to visualize a few vectors (embedding projector). But, now it no longer works.

import numpy as np
from torch.utils.tensorboard import SummaryWriter
vectors = np.array([[0,0,1], [0,1,0], [1,0,0], [1,1,1]])
metadata = ['001', '010', '100', '111']  # labels
writer = SummaryWriter()
writer.add_embedding(vectors, metadata)
writer.close()
%load_ext tensorboard
%tensorboard --logdir=runs 

The error message is

Dynamic plugin isn’t supported in Colab yet.
Please see GitHub issue #1913 for more information.

However, it once worked before. What changes now?

Here's a colab notebook to run the above code.

[stephanwlee]

I believe the issue is resolved by #2798 (related #1913).

Current release (2.1.x) yet does not contain the fix so you will have to wait for next release. If you are inclined, you may use tb-nightly (please uninstall tensorboard by doing pip uninstall tensorboard first, though) to use the fixed version.

[korakot]

It works now! Thanks.

Though you need this hack to avoid get_filesystem bug.

import tensorflow as tf
import tensorboard as tb
tf.io.gfile = tb.compat.tensorflow_stub.io.gfile

[korakot]

It now doesn't work again. Please check and correct the problem.

[lr1100]

I can also affirm this is broken again.

[CodeJjang]

Well installing tb-nightly fixed that for me.