Insert derived traits and meta-data from PlantCV pipeline into BETYdb - Githubissues

terraref / computing-pipeline

Pipeline to Extract Plant Phenotypes from Reference Data

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Insert derived traits and meta-data from PlantCV pipeline into BETYdb #33

Closed dlebauer closed 8 years ago

dlebauer commented 8 years ago

After phenotypes are extracted from PlantCV pipeline, plant-level traits should be inserted into BETYdb, Traits described in Fahlgren et al 2015.

Meta-data:

genotype --> cultivars table; traits.cultivar_id
date / time --> traits.date traits.time
site --> Danforth Lemnatec System
method: PlantCV (sensor name, version)
Data (traits):
Fv/Fm
height
shoot + leaf area
water use efficiency
Absolute growth rate
Fresh-weight biomass
height:width ratio
tiller count

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