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tetherless-world / hhear-ontology

Human Health Environmental Analysis Resource Ontology
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Add Labels and Indicator Membership for HHEAR Study Release #1

Open chipmasters opened 4 years ago

chipmasters commented 4 years ago

To complete the release of HHEAR study 2016-1449 I need labels added to HHEAR ontology for three terms:

chebi:72631 chebi:83490 ncit:c120401

and I need these three classes to be grouped under the "Physical and Mental Assessment" indicator:

ncit:C120401 (T-score) sio:SIO_001245 (standard score) cogat:01393

jpmccu commented 4 years ago

Fixed the first three, please review.

chipmasters commented 4 years ago

@jimmccusker I confirmed that the labels added for the first three are in the new ontology, and we agree that the first two items in the section for missing indicators we don't need to fix, and the third is likely due to a cycle in the rdfs:subClassOf hierarchy that is confusing HADatAc. However, I notice when we worked on the labels on Tuesday, you created a class for "Metabolite" when it seems there is already such a class in HHEAR. Should the first one be merged with the second? Should I open another issue for this?

hhear:00548 a owl:Class ; rdfs:label "Metabolite" ; rdfs:subClassOf hhear:00027 ; ns1:definition "A substance formed in or necessary for metabolism" .

hhear:00362 a owl:Class ; rdfs:label "Metabolite" ; rdfs:subClassOf hhear:00302 ; ns1:definition "The intermediates and products of metabolism. The term metabolite is usually restricted to small molecules. Metabolites have various functions, including fuel, structure, signaling, stimulatory and inhibitory effects on enzymes, catalytic activity of their own (usually as a cofactor to an enzyme), defense, and interactions with other organisms (e.g. pigments, odorants, and pheromones). A primary metabolite is directly involved in normal \"growth\", development, and reproduction. Ethylene is an example of a primary metabolite produced in large-scale by industrial microbiology. A secondary metabolite is not directly involved in those processes, but usually has an important ecological function. Examples include antibiotics and pigments such as resins and terpenes etc. Some antibiotics use primary metabolites as precursors, such as actinomycin which is created from the primary metabolite, tryptophan." .