Optional Dependencies

[swainn]

This PR makes most Python dependencies optional.

TODO:

• [x] Tests and Coverage
• [x] Linting and Black
• [x] Documentation include instructions for dependency installation
• [x] Test manual production deployment
• [x] Update tethys gen metayaml to generate minimal and full versions of the environment
• [x] Update CI to build micro-tethys-platform package in addition to the "normal/full" build

[coveralls]

coverage: 100.0%. remained the same when pulling 98b0ca37ae6544cc7acb9d847fc308b58b5b87d3 on optional_dependencies into f62cebb3d6961ffd34d59bdebf938bd2d3a097a8 on main.

[swainn]

Add instructions to the documentation for installing dependencies for the following features:

• [x] Security Plugins

  • [x] django-cors-headers # enable cors?
  • [x] django-session-security # session timeouts
  • [x] django-axes # tracked failed login attempts / prevent brute-force logins

• [x] Login/Account Plugins

  • [x] django-gravatar2 # user profile avatars
  • [X] django-simple-captcha
  • [X] django-mfa2 # multifactor support
  • [X] django-recaptcha2
  • [X] social-auth-app-django # authenticate with 3rd-party oauth providers
  • [x] hs_restclient # Used with HydroShare
  • [x] python-jose # required by django-mfa2 - used for onelogin backend
  • [x] django-oauth-toolkit

• [x] Misc Plugins

  • [x] django-termsandconditions # require users to accept terms and conditions
  • [x] django-analytical # track usage analytics
  • [x] django-json-widget # enable json widget for app settings
  • [x] djangorestframework # enable REST API framework

• [x] Map Layout Feature

  • PyShp (used by the convert_geojson_to_shapefile() method, but this method is undocumented at the moment)

• [x] Docker CLI

  • docker-py

• [x] Database dependencies

  • [x] postgresql
  • [x] psycopg2 # required by tethys_dataset_services
  • [x] sqlalchemy=1.* # TODO: what will it take to support sqlalchemy 2.0?
  • [x] geoalchemy2 # requires sqlalchemy

• [x] Plotting Gizmo dependencies

  • plotly
  • bokeh<3

• [x] TethysJob Types

  • [x] dask
  • [x] condorpy
  • [x] tethys_dask_scheduler>=1.0.2

• [x] External services dependencies

  • [x] tethys_dataset_services>=2.0.0 # used with all data services
  • [x] owslib # used for creating WPS services
  • [x] siphon # used with Threads

• [x] Datetime dependencies for "humanize" template filter

  • arrow
  • isodate

• [x] Conda to allow Python API access to Conda Install

  • conda
  • conda-libmamba-solver

• [x] Add language/tip boxes to tutorials that use features with optional dependencies (e.g.: gee tutorial uses plotly)

  • [x] Bokeh Integration
  • [x] Advanced Concepts (Persistent Stores)
  • [x] Apps Showcase?
  • [x] Dask

• [x] Mention how to managed optional dependencies in the production deployment

[swainn]

Tutorial language: "...this package may not be included in some Tethys installations, so you should include it as a dependency of your app to ensure it is installed."

[sdc50]

@swainn We need to rebase this branch on master. I'm inclined to squash the commits and then rebase and force push. That would require you (and anyone else that has this branch checked out) to re-set it (or delete and re-checkout). Do you have any changes to push before I do that?

[swainn]

@swainn We need to rebase this branch on master. I'm inclined to squash the commits and then rebase and force push. That would require you (and anyone else that has this branch checked out) to re-set it (or delete and re-checkout). Do you have any changes to push before I do that?

Sounds like a good plan to me. I don't have any changes that I need to merge.

[sdc50]

fixes #980 and fixes #985

[sdc50]

@swainn I've finished the docs for this PR, so it should be ready to go.