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tetomonti / CBMRtools

R package with common use scripts for transcriptomics analysis
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qmatrix2workbook color coding #32

Closed tetomonti closed 6 years ago

tetomonti commented 7 years ago

If there are no significant enrichment's (according to the thresholds specified in the fdr=c(...) field), the generated color-coding of the spreadsheet will be screwed up. Add a check that skips color coding when no significant enrichment's (i.e., when there's a single color)

tetomonti commented 7 years ago

Additionally, it appears the color coding is not always correct. For example, I got heatmaps (and worksheets) generated where negative enrichments were colored in red rather than in blue. See, e.g., file h.all.v5.0.FDRq-val.summary.xlsx at SCC://projects/lymphoma/ricover/gsearesults/