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texworld / betterbib

:green_book: Command-line tools for bibliographies.
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Incorrect replacement #220

Closed jannisborn closed 3 years ago

jannisborn commented 3 years ago

Thanks for the nice package!

The journal Bioinformatics is being replaced with Method. Biochem. Anal. This is incorrect, as per CASSI, Bioinformatics does not require an abbreviation: https://cassi.cas.org/publication.jsp?P=eCQtRPJo9AQyz133K_ll3zLPXfcr-WXfzC0f2rDu7jt-hdyj2IrF7DLPXfcr-WXfMs9d9yv5Zd_72xFCYgjEkzLPXfcr-WXfMs9d9yv5Zd8lhk4KUstlF2wOm4mJuHLo

nschloe commented 3 years ago

The report belongs here. It appears that the file journal_abbreviations_webofscience.csv contains the wrong entry.

jannisborn commented 3 years ago

Ok let's keep this open until the problem is corrected upstream, see PR here

jannisborn commented 3 years ago

Good news: upstream PR has been merged. Bad news: I re-installed betterbib and performed the same command again and the issue persists.

Here's an example for debugging:

@article{karimi2019deepaffinity,
  title={DeepAffinity: interpretable deep learning of compound--protein affinity through unified recurrent and convolutional neural networks},
  author={Karimi, Mostafa and Wu, Di and Wang, Zhangyang and Shen, Yang},
  journal={Bioinformatics},
  volume={35},
  number={18},
  pages={3329--3338},
  year={2019},
  publisher={Oxford University Press}
}
jannisborn commented 3 years ago

Just wanted to let you know that the issue still persists... To me, it does not seem that betterbib uses the updated reference list from JabRef.

nschloe commented 3 years ago

It does. Something else must be wrong, perhaps still in JabRef.