It is extremely cumbersome to use Strahler Analysis with area ROIs to protect branches from the iteration. It would be important to find an alternative method
This is now fixed with the release of BAR 1.0.5 and AnalyzeSkeleton 2.0.3. It is documented here. The only thing that remains to be addressed is proper extension of 'root detection' to 3D images.
It is extremely cumbersome to use Strahler Analysis with area ROIs to protect branches from the iteration. It would be important to find an alternative method