Correctly visualize unspanned insertions in left tails

tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

GNU General Public License v2.0

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Correctly visualize unspanned insertions in left tails #14

Open tfwillems opened 8 years ago

tfwillems commented 8 years ago

When the left portion of a read ends in a part of its haplotype that is an insertion relative to the reference genome, we currently soft clip the sequence when visualizing it. We should fix this issue by tinkering with SeqAlignment/AlignmentTraceback.cpp and the visualization code