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tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
GNU General Public License v2.0
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lzma.h issue #57

Closed richyanicky closed 6 years ago

richyanicky commented 6 years ago

I am installing HipSTR and have come across the following issue on CentOS 6.7. cram/cram_io.c:60:18: fatal error: lzma.h: No such file or directory

include 

              ^

compilation terminated. make[1]: *** [cram/cram_io.o] Error 1

After much searching and installing software and changing paths . I have a copy the lzma.h file and have changed my LD_LIBRARY_PATH with no luck...

I found this reference https://github.com/samtools/bcftools/issues/570

which I was able to follow to get the htslib to compile without lzma.h (same error) support using.

from the post above: make distclean ./configure --disable-lzma make

Is there a way(or should this be done) when installing HipSTR? Regards,

Richard

richyanicky commented 6 years ago

Can be fixed with changes to the makefile.. Will need to repost.