Pooled samples and different ploidy

tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

GNU General Public License v2.0

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Pooled samples and different ploidy #67

Open inti opened 5 years ago

inti commented 5 years ago

Hi, What would be the best way to handle pooled samples and to discover alleles and obtain allele frequencies on the pools? Is it possible to genotype polyploids?

Many thanks in advance !

inti commented 3 years ago

Hello @tfwillems, do you have any thoughts on this?

any idea will be welcomed

sheers