Hi,
I have been using hipSTR recently on cram files. I initially did it on a small set of files to get familiar with the tool and how it works. Everything worked well. After this, I wanted to scale up to running hipSTR on 99 files at a time. In this run, after a long time of running, I got the following error message: ERROR: Failed to extract passes filters tag from BAM alignment
I am having a hard time figuring out what is causing this error. I don't know if it is a problem with just one file or multiple. Is there anything in my cram files I should check or change to avoid this issue?
Any insights would be helpful! Thanks!
Hi, I have been using hipSTR recently on cram files. I initially did it on a small set of files to get familiar with the tool and how it works. Everything worked well. After this, I wanted to scale up to running hipSTR on 99 files at a time. In this run, after a long time of running, I got the following error message:
ERROR: Failed to extract passes filters tag from BAM alignment
I am having a hard time figuring out what is causing this error. I don't know if it is a problem with just one file or multiple. Is there anything in my cram files I should check or change to avoid this issue? Any insights would be helpful! Thanks!