How to segment STR region and flanking region in reads ?

tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

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How to segment STR region and flanking region in reads ? #87

Open Lidweixiang opened 1 year ago

Lidweixiang commented 1 year ago

Hi Thomas!

Recently I read related articles about HipSTR and I'm confused about region segmentation problem of HipSTR. As I know, lobSTR calculates entropy to segment STR regions and flanking regions, but I don't read related info about HipSTR in the paper and codes, do you have any ideas about this? Thanks !