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tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
GNU General Public License v2.0
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Invalid CIGAR char N #93

Open yinxy1992 opened 10 months ago

yinxy1992 commented 10 months ago

I was running HipSTR with the sorted and indexed bam file, but encounter the error " Invalid CIGAR char N". After checking the cpp code, it was found that HipSTR does not deal with the CIGAR character "N", any suggestions?