Will HipSTR genotype imperfect repeat regions ?

tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

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Will HipSTR genotype imperfect repeat regions ? #95

Closed PlanetEarth001 closed 2 months ago

PlanetEarth001 commented 6 months ago

HI,

In STRs we also have regions which will have interruptions in them, will HipSTR be able to genotype imperfect repeat regions if given in the .bed file or will it only genotypes perfect repeats.

thanks, kiran.

HipSTR-Tool commented 6 months ago

It will report imperfect alleles if they’re present