question about large-scale run

tfwillems / HipSTR

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

GNU General Public License v2.0

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Closed muyao11 closed 2 months ago

muyao11 commented 3 months ago

I want to run HipSTR on thousands of next-generation WGS data. Any advice for acceleration？

Tfronta commented 3 months ago

You can use samtools to extract only the regions of interest and after that run all the samples together

muyao11 commented 2 months ago

Get! Thanks for your advice.