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tgen / bisbee

alternative splicing analysis pipeline
MIT License
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errors when outlierFit #9

Open fcgportal opened 1 year ago

fcgportal commented 1 year ago

Thank you for provide such a great tools to analysis splicing.

I tried to run outlireFit.R on gtex data from GDC, and got lots of errors popped out kept saying

Error in solve.default(oout$hessian) : Lapack routine dgesv: system is exactly singular: U[1,1] = 0

Any advice? Thanks!

This is my code: python ./bisbee/utils/prep.py gtex_merge_graphs_exon_skip_C2.counts.hdf5 ES gtex.pre.es 1 Rscript ./bisbee/stats/outlierFit.R gtex.pre.es.bisbeeCounts.csv 80 gtex.es

Rojashree-Jayakumar commented 1 year ago

I am getting the same error when I run differential splicing (Rscript stats/diff.R). Is there any solution?