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tgen / jetstream_resources

Collection of scripts and README files tracking the source and generation of reference genomes and annotation files
MIT License
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Chip updates #12

Closed bryce-turner closed 4 years ago

bryce-turner commented 4 years ago

This also includes some suncity changes

bryce-turner commented 4 years ago

Deleted build_hg38tgen to avoid merge conflicts. Relevant code in this script:

echo "Create 2bit genome reference" >> README
rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/faToTwoBit ./
fc -ln -1 >> README
echo >> README
./faToTwoBit GRCh38tgen_decoy_alts_hla.fa GRCh38tgen_decoy_alts_hla.2bit
fc -ln -1 >> README
echo >> README
PedalheadPHX commented 4 years ago

Pulled chip updates to develop