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tgen / jetstream_resources

Collection of scripts and README files tracking the source and generation of reference genomes and annotation files
MIT License
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Suncity and non-phoenix HARD PATH VARIABLES #19

Closed PedalheadPHX closed 3 years ago

PedalheadPHX commented 4 years ago

https://github.com/tgen/jetstream_resources/blob/e960487d0aca68a35f07c674faea954ad08b176e/suncity/suncity_resources.ini#L44-L45

For the dynamic scripts there should be no variables that are hard paths, all should be relative to the defined build locations.

I removed the need for these in the GATK_CNV script but didn't review others

PedalheadPHX commented 4 years ago

Resolved for phoenix