Phoenix - Pairoscope - Region to be skipped - Structural Variant - Exome -TumorOnly

tgen / jetstream_resources

Collection of scripts and README files tracking the source and generation of reference genomes and annotation files

MIT License

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Phoenix - Pairoscope - Region to be skipped - Structural Variant - Exome -TumorOnly #49

Closed ChristopheLegendre closed 3 years ago

ChristopheLegendre commented 3 years ago

Phoenix - Pairoscope - Region to be skipped - Structural Variant - Exome -TumorOnly

New MYC Region to be skipped in Pairsocope (aka mm_igtx_pairsocope) chr8:128,452,800-128,453,150

This exact region of non-specific alignment is present in the 20 CANDOR samples I have looked into IGV. In order to minimize potential issues with the tool pairoscope, we need to blank out this region.

Screenshot: Screen Shot 2021-01-05 at 15 43 50

bryce-turner commented 3 years ago

This is handled directly in Phoenix, closing this issue as it has been resolved already on the Phoenix repo.