There is nothing in this script that creates the hg38.excl that is part of the folder. Need to define it. For now I just copied it to the same folder as the annotations
FYI - I changed the output path to be under the gene_model as the annotation are gene model specific.
Also, clearly the code was changed on dback but not pushed to git hub so when the pull of my chages occured there was a conflict. Need to ensure we ONLY do pulls in the jetstream user account its the only way we can audit changes.
https://github.com/tgen/jetstream_resources/blob/22a4593b0c9e25980be1b49ed1462240d54c4173/phoenix/build_annotation_files/build_delly_annotations_e98.sh#L81
There is nothing in this script that creates the hg38.excl that is part of the folder. Need to define it. For now I just copied it to the same folder as the annotations
FYI - I changed the output path to be under the gene_model as the annotation are gene model specific.
Also, clearly the code was changed on dback but not pushed to git hub so when the pull of my chages occured there was a conflict. Need to ensure we ONLY do pulls in the jetstream user account its the only way we can audit changes.