GATK file lock - Githubissues

tgen / pegasusPipe

MIT License

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Closed tgenahmet closed 7 years ago

tgenahmet commented 7 years ago

add option to NOT create a file lock. Most common with vcfMerger's variant annotator. --disable_auto_index_creation_and_locking_when_reading_rods

tgenahmet commented 7 years ago

Another one is CombineVariants in germVcfMerger.

tgenahmet commented 7 years ago

Another one is jointIR "Realigner Target Creator" step.

tgenahmet commented 7 years ago

Still need to modify jointIR like the others.