Closed tgenahmet closed 7 years ago
Nope. a period is not allowed. here is the power point that has the break down of the naming convention.
I’m guessing this was done outside of KBase? I can double check.
-- Austin Christofferson Bioinformatician Translational Genomics Research Institute
445 North Fifth Street, Phoenix, AZ 85004 (W) 602-343-8671 | (M) 480-650-4067 achristofferson@tgen.org | www.keatslab.org | www.tgen.org
From: tgenahmet notifications@github.com notifications@github.com Reply: tgen/pegasusPipe reply@reply.github.com reply@reply.github.com Date: March 12, 2017 at 2:00:41 PM To: tgen/pegasusPipe pegasuspipe@noreply.github.com pegasuspipe@noreply.github.com Cc: Austin Christofferson achristofferson@tgen.org achristofferson@tgen.org, Mention mention@noreply.github.com mention@noreply.github.com Subject: [tgen/pegasusPipe] vcfMerger parsing sample names (#17)
Can a sample name contain a period "."? I believe this is causing vcfMerger to parse file names incorrectly which in turn is creating a 0 byte vcf file which in turn is crashing GATK.
project: MMUM_008_N01502
I can't recall all of the sample name requirements for the pipeline... @denriquez https://github.com/denriquez @awchrist https://github.com/awchrist
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config file validation now makes sure no periods are used.
Can a sample name contain a period "."? I believe this is causing vcfMerger to parse file names incorrectly which in turn is creating a 0 byte vcf file which in turn is crashing GATK.
project: MMUM_008_N01502
I can't recall all of the sample name requirements for the pipeline... @denriquez @awchrist