pegasus_finalize.sh
which is one of the last scripts run in the pipe is doing an md5sum on the headnode.
we need to switch this to being done at the pbs level when the bam gets created and then modify the md5sum filename inside the file to prepare for when the file is renamed.
pegasus_finalize.sh which is one of the last scripts run in the pipe is doing an md5sum on the headnode. we need to switch this to being done at the pbs level when the bam gets created and then modify the md5sum filename inside the file to prepare for when the file is renamed.