vcfMerger.sh needs updated BED file

tgen / pegasusPipe

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vcfMerger.sh needs updated BED file #4

Closed tgenahmet closed 7 years ago

tgenahmet commented 7 years ago

V6+COSMIC (kit) needs to call this file: /home/tgenref/pecan/annotations/exome_capture/Agilent_SureSelect_V6R2_plusCOSMIC/Agilent_SureSelect_V6R2_plusCOSMIC_hs37d5_GRCh37.74_PaddedTargets_intersect_sorted_padded100.bed

tgenahmet commented 7 years ago

Note to self: testing this on GBM_UPN109_ps201702131355 with jobs 3497104, 3497103, 3497102. @jaldrich