jobscript is setting the memory per core at --mem-per-cpu 5000
This is ridiculously high for bwa, which should not be using much more than 5-9GB or ram for the run. It is also preventing bwa from getting on anything but the top end boxes which is slowing things down
jobscript is setting the memory per core at --mem-per-cpu 5000
This is ridiculously high for bwa, which should not be using much more than 5-9GB or ram for the run. It is also preventing bwa from getting on anything but the top end boxes which is slowing things down
I would set it to 2000 or 3000 at the most