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tgen / phoenix

Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38
MIT License
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GaMMiT reduction of frag_count in updated script #447

Open bryce-turner opened 3 years ago

bryce-turner commented 3 years ago

In comparing old vs new results we noticed improved breakend location calls, but also a potentially severe reduction in what is qualified in the frag_count, this is relatively synonymous with the min reads. Since our min reads is set to 5, there was a small loss of calls - In testing we lost ~1% of overall calls (1 out of 96 previous results).

PedalheadPHX commented 2 years ago

@bryce-turner @ChristopheLegendre Did we resolve this, or are we maybe encountering it again?