Add IMGT VDJ reference to CellRanger Analysis

tgen / phoenix

Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38

MIT License

17 stars 6 forks source link

Open ekelley903 opened 3 years ago

ekelley903 commented 3 years ago

Would it be possible to add an option to run VDJ analysis using the IMGT database as the reference (as opposed to vdj_GRCh38_alts_ensembl-5.0.0, the current reference)? 10X provides a build script for this here: https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/advanced/references#header Thank you!

PedalheadPHX commented 3 years ago

Do you have a feel on the benefit or using this one?