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tgen / tempe

A container focused and streamlined iteration of the Phoenix pipeline
GNU General Public License v3.0
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Output VEP cononical/pick/Mane #41

Closed PedalheadPHX closed 1 year ago

PedalheadPHX commented 1 year ago

https://github.com/tgen/tempe/blob/7575cec83822ed77b0d0747e0ff3cf91dfd7a956/modules/annotation/vep.j2#L106-L107

pick would be the old nomenclature, should maybe changed to "mane"

PedalheadPHX commented 1 year ago

guess it is still the pick process, just mane is not priority order

bryce-turner commented 1 year ago

Consistent with https://github.com/tgen/tempe/releases/tag/v1.2.0, pick order uses mane as top priority, overall pick order was updated for consistency with VEP/Ensembl pick order