VEP annotation of Manta outputs from constitutional samples

tgen / tempe

A container focused and streamlined iteration of the Phoenix pipeline

GNU General Public License v3.0

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Closed PedalheadPHX closed 10 months ago

PedalheadPHX commented 1 year ago

The diploid.SV.vcf.gz should be filtered to PASS events and annotated with VEP like we do for somatic manta outputs

bryce-turner commented 10 months ago

Added as part of the #58 release and PR, adjusted the flow slightly in #62 to fix some downstream processing issue with VEP in certain cases.