This bumps deepvariant to use the v1.6.0 release, a notable change is the path to the checkpoint model now is just the parent dir (this appears to be the same method deepvariant uses internally with the run_deepvariant.py script).
Additionally, postprocess_variants needed more memory in testing, so the memory bins have been shifted. But postprocess_variants now supports --cpus for multithreading. We have set this to 4 to help with cpu+memory packing.
This bumps deepvariant to use the v1.6.0 release, a notable change is the path to the checkpoint model now is just the parent dir (this appears to be the same method deepvariant uses internally with the
run_deepvariant.pyscript).Additionally, postprocess_variants needed more memory in testing, so the memory bins have been shifted. But postprocess_variants now supports
--cpusfor multithreading. We have set this to 4 to help with cpu+memory packing.