tgen / tempe

A container focused and streamlined iteration of the Phoenix pipeline
GNU General Public License v3.0
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Improving task control syntax for snpsniffer and RNA tasks #59

Closed bryce-turner closed 12 months ago

bryce-turner commented 12 months ago

Improving task control syntax by using task['task_name']|default() instead of task.task_name|default() as this handles existence checks. This is relevant for cases where the task list has not been defined - or if the specific task variable we are checking for does not exist.

We also now enable snpsniffer by default, since alignment is enabled by default if no tasks are defined.