Open PedalheadPHX opened 3 days ago
https://github.com/tgen/tempe/blob/2e3d76d92617ddfbb7cc7f56cdf06fdf00539899/pipeline.yaml#L100
There is a good chance we are running markdups much longer than needed given updates in 1.19, should consider an update for future proofing and limiting failures common due to the chr2 poly G region and other high depth region
https://github.com/tgen/tempe/blob/2e3d76d92617ddfbb7cc7f56cdf06fdf00539899/pipeline.yaml#L100
There is a good chance we are running markdups much longer than needed given updates in 1.19, should consider an update for future proofing and limiting failures common due to the chr2 poly G region and other high depth region