Closed awchrist closed 5 years ago
When it fails this check it is also not exiting with a non zero exit status.
forgot to add the number 1
into the exit status code when an error is raised; --> FIXED
--lbams
was a typo in the error message ; --bams
is correct as you figured. --> FIXED
Added testing the value of the variable skip-prep-vcfs
when strelka2 tool is provided; --FIXED line 844 and 846 in vcfMErger2 code version 0.7.6 ; creation of release 0.7.7
I am getting the following error, however there is no option "--lbams" based on the options list. ERROR: You must provide the Tumor BAM files to the option --lbams ; Aborting.