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tgen / vcfMerger2

Dynamic vcfMerger for 2 to N somatic variants vcf files
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Octopus AR precision #16

Closed PedalheadPHX closed 4 years ago

PedalheadPHX commented 4 years ago

https://github.com/tgen/vcfMerger2/blob/20676d9cd31e53a90462599a2c3b5cb87681d0be/prep_vcfs_somatic/octopus/octopus.somatic.addFieldsForVcfMerger.py#L398-L410

I would round to 3rd or 4th precision, right now a 2/44 = 0.04545 becomes 0.05 and then gets into merged vcf after filtering AR >= 0.05. But in this example it didn't meet the actual threshold but did because we rounded up to the 2nd precision level

ChristopheLegendre commented 4 years ago

Each AR value is now rounded with 4 digits precision.