Closed PedalheadPHX closed 5 years ago
As I remember only one caller adds the string "assembly=GRCh38".
Using a sed
command should help us deal with this by removing the string at the Prep level
sed
command to remove any additional information after assembly
in the contig
header lines.
We need to fix the multiple headers, maybe add to the prep to correct the one to match the others
fileformat=VCFv4.2
fileDate=20190502
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=
contig=