Closed ChristopheLegendre closed 1 year ago
Doesn't ALT-ALT = Homozygous ALT
The issue was not really with this line but the check_ev line 139 which was a copy/paste of a previous statement. That misleading. modification will be applied accordingly.
https://github.com/tgen/vcfMerger2/blob/8ed9a05b7a23c8a0c2db80fcf83683c35f6602a7/prep_vcfs_somatic/strelka2/strelka2.phasing_consecutives_variants_as_blocs.sh#L137
replace
homozygous
withheterozygous
on that line.