search

tgen / vcfMerger2

Dynamic vcfMerger for 2 to N somatic variants vcf files
Other
5 stars 1 forks source link

typo or wrong annotation #26

Closed ChristopheLegendre closed 1 year ago

ChristopheLegendre commented 1 year ago

https://github.com/tgen/vcfMerger2/blob/8ed9a05b7a23c8a0c2db80fcf83683c35f6602a7/prep_vcfs_somatic/strelka2/strelka2.phasing_consecutives_variants_as_blocs.sh#L137

replace homozygous with heterozygous on that line.

PedalheadPHX commented 1 year ago

Doesn't ALT-ALT = Homozygous ALT

ChristopheLegendre commented 1 year ago

The issue was not really with this line but the check_ev line 139 which was a copy/paste of a previous statement. That misleading. modification will be applied accordingly.