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tgen / vcfMerger2

Dynamic vcfMerger for 2 to N somatic variants vcf files
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Suggestion: allow users to add phASER as a path #28

Open bozbezbozzel opened 1 year ago

bozbezbozzel commented 1 year ago

Requiring phASER to be part of the $PATH makes it harder than it needs to be to integrate vcfMerger2 into snakemake (for example). An option to provide a path to the built local version pf phASER would be appreciated. Thanks for all your work.

bozbezbozzel commented 1 year ago

I've now added my own ugly fix by changing PHASER_EXE=phaser.py ; ## phASER requires python2.xx (not 3) to include the full path to the phaser executable.