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tgirke / systemPipeR

Project Website:
http://girke.bioinformatics.ucr.edu/systemPipeR
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Error when trying to preprocessReads() : "Error: logical subscript contains NAs" #12

Closed jsalsager closed 5 years ago

jsalsager commented 5 years ago

Hi,

This issue is cross posted on the bioconductor support page. There I have posted a full example of my code. But basically when I try to use preprocessReads() with the standard protocol, it runs into an error saying "Error: logical subscript contains NAs". Do you know where I am going wrong? All my paths are correct and I have verified my targetsPE.txt file and trimPE.param files.

Thanks so much!

Simon

https://support.bioconductor.org/p/115482/

dcassol commented 5 years ago

Hi @jsalsager, I'm going to close this for now, since I continued the discussion on the Bioconductor support page. Feel free to re-open. Cheers,