geom_link new error

[MaximePolicarpo]

Hi !

I am encountering a strange error since today, while running the exact same code that worked few days ago.

I have three tibble objects for the seqs, genes and links layers : p <- gggenomes(seqs=my_seqs, genes=my_genes, links=my_links)

But when I try to plot it , I get the following error messages:

p + geom_seq() + geom_gene() + geom_link(aes(fill=OGG, color=OGG))

Error in geom_link(): ! Problem while converting geom to grob. Error occurred in the 3rd layer. Caused by error in link_to_poly(): ! object 'new_data_frame' not found

When trying to plot the graph without the link, however, works perfectly fine : p + geom_seq() + geom_gene()

Did anyone encounter the same error recently ?

Here is the full code to reproduce this error :

myseqs <- read.table("github_cluster_id_arranged.txt", sep=",") colnames(my_seqs) <- c("bin_id", "seq_id", "length") my_seqs <- tibble(my_seqs)

my_genes <- read.table("github_seq_clustered_infos_ogg_ordered.csv", sep=",") colnames(my_genes) <- c("seq_id", "start", "end", "gene_name", "strand") my_genes <- tibble(my_genes)

my_links <- read.table("github_link_table.txt", sep=",") colnames(my_links) <- c("seq_id", "start", "end", "seq_id2", "start2","end2", "OGG") my_links <- tibble(my_links)

p <- gggenomes(seqs=my_seqs, genes=my_genes, links=my_links) p + geom_seq() + geom_gene() + geom_link(aes(fill=OGG, color=OGG))

Thanks for any help provided, Cheers,

Maxime github_cluster_id_arranged.txt github_link_table.txt github_seq_clustered_infos_ogg_ordered.csv

[thackl]

Reinstalling gggenomes should fix this (#131). It's caused by an update to ggplot v3.4.0+

[MaximePolicarpo]

Thank you a lot ! I reinstalled gggenomes and restarted Rstudio and it now works perfectly fine !

All the best,

Maxime