Closed ChongLC closed 1 year ago
Dear developer,
I was trying to install gggenomes on my own laptop (Windows, RStudio version - R-4.2.0). However, it failed with the error message below:
Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/thackl/gggenomes/tarball/HEAD' failed
The code that I used for installing, which is similar to the provided one:-
# Installation of gggenomes # install ggtree # https://bioconductor.org/packages/release/bioc/html/ggtree.html if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ggtree") # install.packages("devtools") devtools::install_github("thackl/thacklr") devtools::install_github("thackl/gggenomes")
I used the same method to install through the RStudio cloud, it was a success. Do you have any idea why is it so?
More details of my laptop's RStudio:
R.Version() $platform [1] "x86_64-w64-mingw32"
R.Version()
$platform [1] "x86_64-w64-mingw32"
$arch [1] "x86_64"
$os [1] "mingw32"
$crt [1] "ucrt"
$system [1] "x86_64, mingw32"
$status [1] ""
$major [1] "4"
$minor [1] "2.0"
$year [1] "2022"
$month [1] "04"
$day [1] "22"
$svn rev [1] "82229"
svn rev
$language [1] "R"
$version.string [1] "R version 4.2.0 (2022-04-22 ucrt)"
$nickname [1] "Vigorous Calisthenics"
> sessionInfo()
R version 4.2.0 (2022-04-22 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 [4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] Rcpp_1.0.9 compiler_4.2.0 later_1.3.0 BiocManager_1.30.19 urlchecker_1.0.1 prettyunits_1.1.1 profvis_0.3.7 [8] remotes_2.4.2 tools_4.2.0 digest_0.6.31 pkgbuild_1.4.0 pkgload_1.3.2 memoise_2.0.1 lifecycle_1.0.3 [15] rlang_1.0.6 shiny_1.7.4 cli_3.5.0 rstudioapi_0.14 curl_4.3.3 fastmap_1.1.0 withr_2.5.0 [22] stringr_1.5.0 fs_1.5.2 htmlwidgets_1.6.0 vctrs_0.5.1 devtools_2.4.5 glue_1.6.2 R6_2.5.1 [29] processx_3.8.0 sessioninfo_1.2.2 callr_3.7.3 purrr_1.0.0 magrittr_2.0.3 ps_1.7.2 promises_1.2.0.1 [36] ellipsis_0.3.2 htmltools_0.5.4 usethis_2.1.6 mime_0.12 xtable_1.8-4 httpuv_1.6.7 stringi_1.7.8 [43] miniUI_0.1.1.1 cachem_1.0.6 crayon_1.5.2
Best regards, Chong
I have solved this issue by referring to this https://github.com/forestgeo/learn/issues/102. I will then close this issue. Thank you.
Dear developer,
I was trying to install gggenomes on my own laptop (Windows, RStudio version - R-4.2.0). However, it failed with the error message below:
The code that I used for installing, which is similar to the provided one:-
I used the same method to install through the RStudio cloud, it was a success. Do you have any idea why is it so?
More details of my laptop's RStudio:
$arch [1] "x86_64"
$os [1] "mingw32"
$crt [1] "ucrt"
$system [1] "x86_64, mingw32"
$status [1] ""
$major [1] "4"
$minor [1] "2.0"
$year [1] "2022"
$month [1] "04"
$day [1] "22"
$
svn rev
[1] "82229"$language [1] "R"
$version.string [1] "R version 4.2.0 (2022-04-22 ucrt)"
$nickname [1] "Vigorous Calisthenics"
R version 4.2.0 (2022-04-22 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 [4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] Rcpp_1.0.9 compiler_4.2.0 later_1.3.0 BiocManager_1.30.19 urlchecker_1.0.1 prettyunits_1.1.1 profvis_0.3.7
[8] remotes_2.4.2 tools_4.2.0 digest_0.6.31 pkgbuild_1.4.0 pkgload_1.3.2 memoise_2.0.1 lifecycle_1.0.3
[15] rlang_1.0.6 shiny_1.7.4 cli_3.5.0 rstudioapi_0.14 curl_4.3.3 fastmap_1.1.0 withr_2.5.0
[22] stringr_1.5.0 fs_1.5.2 htmlwidgets_1.6.0 vctrs_0.5.1 devtools_2.4.5 glue_1.6.2 R6_2.5.1
[29] processx_3.8.0 sessioninfo_1.2.2 callr_3.7.3 purrr_1.0.0 magrittr_2.0.3 ps_1.7.2 promises_1.2.0.1
[36] ellipsis_0.3.2 htmltools_0.5.4 usethis_2.1.6 mime_0.12 xtable_1.8-4 httpuv_1.6.7 stringi_1.7.8
[43] miniUI_0.1.1.1 cachem_1.0.6 crayon_1.5.2