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thackl / gggenomes

A grammar of graphics for comparative genomics
https://thackl.github.io/gggenomes/
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Installation error #140

Closed Angel-Popa closed 1 year ago

Angel-Popa commented 1 year ago

Hi,

I am trying to install gggenome but get this error while installing the dependencies:

`> devtools::install_github("thackl/thacklr") Downloading GitHub repo thackl/thacklr@HEAD These packages have more recent versions available. It is recommended to update all of them. Which would you like to update?

1: All
2: CRAN packages only
3: None
4: ggtree (3.6.2 -> 431ec37bc...) [Bioc]

Enter one or more numbers, or an empty line to skip updates: 3 Error: Failed to install 'thacklr' from GitHub: Multiple results for CXX11FLAGS found, something is wrong.FALSE`

How can I fix this issue?

thackl commented 1 year ago

Hi Angel,

that's an odd error, not sure what might cause this. Can you install other packages with devtools or is this specific to installing thacklr?

Angel-Popa commented 1 year ago

It seems the error is with install_github and not with the package. I tried to install BHS and got this error at the end:

Error: Failed to install 'brms' from GitHub: Multiple results for CXX11FLAGS found, something is wrong.FALSE

Angel-Popa commented 1 year ago

Okay, I found the solution to the issues (it is similar to a report in the Rstan github page.

As the error described initially, I had multiple CXX11FLAGS. These flags are found in the Makevars.win file in windows. To find them, you can run the following:

file.edit(file.path(Sys.getenv("HOME"), ".R", "Makevars.win"))

And remove duplicated flags.

I'll close this issue as it does not relate to gggenomes and it is also solved.