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thackl / gggenomes

A grammar of graphics for comparative genomics
https://thackl.github.io/gggenomes/
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Errors when running read_feats command #149

Closed fusho96 closed 1 year ago

fusho96 commented 1 year ago

Platform: Ubuntu 22.04.2 LTS, R ver. 4.3.0, when running the command in getting started, the results were like this:

g0 <- read_feats(ex("emales/emales.gff")) Reading 'gff3' with read_gff3():

  • file_id: emales [/usr/local/lib/R/site-library/gggenomes/extdata/emales/emales.gff] Error in map2(): ℹ In index: 1. ℹ With name: emales. Caused by error in map(): ℹ In index: 1. Caused by error in !str_length(r) || is.na(r): ! 'length = 3' in coercion to 'logical(1)' Run rlang::last_trace() to see where the error occurred.

Is there any way to solve this issue?

thackl commented 1 year ago

Interesting, I don't get anything like that on my still R-4.1.2 system, then there are similar warnings in the online documentation built on R 4.2 (https://thackl.github.io/gggenomes/reference/read_tracks.html) and for your with R-4.3 system it seems to cause an error... Will look into it asap.

thackl commented 1 year ago

Just pushed new code. Should work after reinstalling gggenomes.

fusho96 commented 1 year ago

Thanks a lot for the quick response. I got the same error when reinstalling gggenomes. Well, I tried to rollback the R version to 4.1, and it worked. Thanks for providing the advice.