thasso / pyjip

JIP Pipeline System
http://pyjip.readthedocs.org
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Inconsistency between job().bash() and bash() usage in pipeline #20

Closed thasso closed 10 years ago

thasso commented 10 years ago

In simple bash() usage in a pipeline, the command is rendered directly, while using job().bash() causes the command to be rendered later, when all options are set to their final values. The latter is the correct behaviour as option values might change.