Open mherold1 opened 4 years ago
Regarding your first question I ran into the same problem and I believe it is because the jarfile is really large and so you need git lfs
installed. In my case I also needed to run these commands after cloning the repo (even though git lfs was installed beforehand):
git lfs install
git lfs pull
The jarfile (and possibly other large files) were downloaded properly after running those commands.
Hello,
thanks for providing this tool, after reading the preprint I wanted to try it out. After the installation and adapting the
config.properties
file I tried to run it on the example dataset and got:Do you have an idea what could be going wrong here?
Also I noticed in the comments in config.properties file:
Shouldn't this be the other way around, I thought longranger is only used if the input is 10x linked-reads?