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theMILOlab / SPATA2

A Toolbox for Spatial Transcriptomics Analysis
https://themilolab.github.io/SPATA2/
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Installation problem of SPATA2 package #186

Open meiweijiucai opened 1 month ago

meiweijiucai commented 1 month ago

The dependent packages c('BiocGenerics', 'DelayedArray', 'DelayedMatrixStats','limma', 'S4Vectors','SingleCellExperiment','SummarizedExperiment', 'batchelor', 'Matrix.utils', 'EBImage') were installed successfully.

The confuns and SPATAData were also installed successfully.

When I tried devtools::install_github(repo = "theMILOlab/SPATA2"), the following error occurred:

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getMoleculeTypeList.Rd:20: missing link 'concept_molecular_modality'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getMolecules.Rd:113: missing link 'getSignatures'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getSasDf.Rd:51: missing link 'validUnitsofArea'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getSmrdResultsDf.Rd:10: missing link 'getSgsResults'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getSpatAnnArea.Rd:42: missing link 'validUnitsofArea'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getStsDf.Rd:39: missing link 'validUnitsofArea'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/getTissueArea.Rd:23: missing link 'concept_area_measures'

Rd warning: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/loadSpataObject.Rd:10: missing link '`SPATA2''

error: C:/TempFiles/Rtmp8uMJBf/R.INSTALL2324a7302f/SPATA2/man/obsUnit.Rd:25: Bad \link option -- must be text

kueckelj commented 1 month ago

Hi, can you try again and see if the problem persists?